![]() The SPADE software is freely available for academic use. If you would like to be informed on the updates, please join our Google group for SPADE updates, by following the link or by emailing me. The software is updated every other month. Or have any question about the user's manual below, please contact The improvement is achieved by re-implementing With better graphical user interface and faster running speed. The version that generated all figures in the SPADE was originally developed and implemented in MATLAB. Peng Qiu, "Inferring phenotypic properties from single-cellĬharacteristics", PLoS ONE, 7(5): e37038, 2012.Plevritis, "Extracting aĬellular Hierarchy from High-dimensional Cytometry Data with SPADE", Nature Biotechnology, 29(10):886-891, 2011. It views single-cell data as a high-dimensional point cloud and extracts the shape of the cloud, details described in: SPADE is a new analytical tool for single-cell cytometryĭata analysis. SPADE V2.0 - Spanning-tree Progression Analysis
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